Automatic bayesian classification of healthy controls, bipolar disorder, and schizophrenia using intrinsic connectivity maps from fMRI data

TitleAutomatic bayesian classification of healthy controls, bipolar disorder, and schizophrenia using intrinsic connectivity maps from fMRI data
Publication TypeJournal Article
Year of Publication2010
AuthorsArribas, J. I., V. D. Calhoun, and T. Adali
JournalIEEE Transactions on Biomedical Engineering
KeywordsAlgorithms, Artificial Intelligence, Bayes Theorem, Bayesian learning, Bayesian networks, Biological, Brain, Case-Control Studies, Classifiers, Computer-Assisted, Diseases, Functional MRI (fMRI), Humans, Learning machines, Learning systems, Magnetic Resonance Imaging, Models, Operation characteristic, Optimization, ROC Curve, Reproducibility of Results, Signal Processing, Singular value decomposition, Statistical tests, Stochastic models, Student t test, area under the curve, article, bipolar disorder, classification, controlled study, functional magnetic resonance imaging, human, machine learning, major clinical study, neuroimaging, patient coding, receiver operating characteristic, reliability, schizophrenia

We present a method for supervised, automatic, and reliable classification of healthy controls, patients with bipolar disorder, and patients with schizophrenia using brain imaging data. The method uses four supervised classification learning machines trained with a stochastic gradient learning rule based on the minimization of KullbackLeibler divergence and an optimal model complexity search through posterior probability estimation. Prior to classification, given the high dimensionality of functional MRI (fMRI) data, a dimension reduction stage comprising two steps is performed: first, a one-sample univariate t-test mean-difference Tscore approach is used to reduce the number of significant discriminative functional activated voxels, and then singular value decomposition is performed to further reduce the dimension of the input patterns to a number comparable to the limited number of subjects available for each of the three classes. Experimental results using functional brain imaging (fMRI) data include receiver operation characteristic curves for the three-way classifier with area under curve values around 0.82, 0.89, and 0.90 for healthy control versus nonhealthy, bipolar disorder versus nonbipolar, and schizophrenia patients versus nonschizophrenia binary problems, respectively. The average three-way correct classification rate (CCR) is in the range of 70%-72%, for the test set, remaining close to the estimated Bayesian optimal CCR theoretical upper bound of about 80%, estimated from the one nearest-neighbor classifier over the same data. © 2010 IEEE.